SNP Profiles of IMC 96 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
1._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
2._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
3._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
4._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
5._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
6._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
7._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
8._IMC_96	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
9._IMC_96	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
10._IMC_96	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA
11._GC-08-255-8-23	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
1._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
2._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
3._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
4._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
5._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
6._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
7._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
8._IMC_96	TT	AA	GG	CC	CC	GG	AA	CC	_	GG	GT	CT	CC	AA
9._IMC_96	TT	AA	GG	CC	CC	GG	AA	CC	_	GG	GT	CT	CC	AA
10._IMC_96	CT	AA	CG	CC	GG	GG	AA	CT	AA	CC	GT	CC	AC	AA
11._GC-08-255-8-23	CT	AA	CG	CC	GG	GG	AA	CT	AA	CC	GT	CC	AC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
1._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
2._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
3._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
4._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
5._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
6._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
7._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
8._IMC_96	GG	AA	CT	AG	_	AC	CC	GT	CC	TT	GG	X_X	X_X	X_X
9._IMC_96	GG	AA	CT	AG	_	AC	CC	GT	CC	TT	GG	X_X	X_X	X_X
10._IMC_96	GG	AA	CT	AA	CC	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
11._GC-08-255-8-23	GG	AA	CT	AA	CC	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X

Input profile: IMC_96

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Mars Center for Cocoa Science, Brazil

Location: 8823 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._IMC_96

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 6

Dapeng Zhang, 2016

2._IMC_96

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 5

Dapeng Zhang, 2016

3._IMC_96

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 2

Dapeng Zhang, 2016

4._IMC_96 GC-08-255-8-23

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._IMC_96 GC-08-255-8-23

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._IMC_96 GC-08-255-8-23

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._IMC_96 GC-08-255-8-23

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._IMC_96

79.7 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A46 T2

Dapeng Zhang, 2016

9._IMC_96

79.7 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D562

Dapeng Zhang, 2016

10._IMC_96

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 4

Dapeng Zhang, 2016

11._IMC_96 GC-08-255-8-23

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25